It was during his teacher training sessions in the 2000s that Choudhury's reputation as a cult-like figure began to be recognised as dangerous. In 2013, six of the yogi's students came forward and accused him of rape and sexual assault. At least one of Choudhury's accusers has chosen to remain anonymous to protect her privacy. In a May 2018 interview with The Wrap, 30 for 30 producer Julia Lowrie Henderson said that the complaints arose between 2005 to 2012. The women alleged that during the nine-week sessions he would take advantage of them and groom them for abuse. "He would lecture late into the night, then he call on young women to massage him and brush his hair," Henderson said. "It was a classic grooming technique but he normalised something that crossed the line — making abnormal behaviour normal."
Minakshi Jafa-Bodden served as Choudhury's legal adviser beginning in 2011. It was her job to clean up the yogi's messes from allegedly failing to pay his hotel bills to allegations of racism and homophobia. "He would pick on someone in the crowd. If someone got up to go to the toilet, he would say, 'Where are you going? To change your tampon?' He uses profanities, he's antisemitic, he's homophobic," Jafa-Bodden told The Guardian. "He'll say things like, 'Blacks don't get my yoga.' And once he starts on his tirade of profanity, he doesn't stop. Once he's picked on you, then you've had it for the entire class."
His transgressions allegedly went far past verbal abuse. Jafa-Bodden claims that the yogi held professional meetings in his hotel rooms, and on one occasion asked her to get into bed with him. In 2013, his student Sarah Baughn came forward with her allegations that Choudhury sexually assaulted her at one of his training camps in 2008. Another one of his students, Maggie Genthner, accused him of raping her twice and forcing her legs into yoga positions. Throughout it all, his legal adviser was expected to make the allegations disappear. At one point Jafa-Bodden advised him to stop inviting students to his hotel rooms, and she claimed he went in front of an entire class and said, "'My lawyer tells me I can't have a girl in my room. So I'm now going to have two!'"